ENSMUSG00000041852


Mus musculus

Features
Gene ID: ENSMUSG00000041852
  
Biological name :Tcf20
  
Synonyms : Q9EPQ8 / Tcf20 / Transcription factor 20
  
Possible biological names infered from orthology : Q9UGU0
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: E1
Gene start: 82808436
Gene end: 82987872
  
Corresponding Affymetrix probe sets: 10430920 (MoGene1.0st)   1421909_at (Mouse Genome 430 2.0 Array)   1421910_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000154966
Ensembl peptide - ENSMUSP00000105136
Ensembl peptide - ENSMUSP00000155055
Ensembl peptide - ENSMUSP00000155508
Ensembl peptide - ENSMUSP00000048486
NCBI entrez gene - 21411     See in Manteia.
MGI - MGI:108399
RefSeq - XM_011245553
RefSeq - NM_001114140
RefSeq - NM_013836
RefSeq - XM_006520733
RefSeq - XM_011245551
RefSeq - XM_011245552
RefSeq - XM_006520732
RefSeq Peptide - NP_038864
RefSeq Peptide - NP_001107612
swissprot - Q9EPQ8
Ensembl - ENSMUSG00000041852
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tcf20ENSDARG00000078348Danio rerio
 TCF20ENSGALG00000011878Gallus gallus
 TCF20ENSG00000100207Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rai1 / Q61818 / retinoic acid induced 1 / Q7Z5J4*ENSMUSG0000006211521
Zfp957 / zinc finger protein 957 / TCF20* / Q9UGU0* / transcription factor 20*ENSMUSG0000007126216


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR034732  Extended PHD (ePHD) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0016604 nuclear body ISO
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IC
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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