ENSGALG00000011878


Gallus gallus

Features
Gene ID: ENSGALG00000011878
  
Biological name :TCF20
  
Synonyms : TCF20 / transcription factor 20
  
Possible biological names infered from orthology : Q9EPQ8 / Q9UGU0 / Zfp957 / zinc finger protein 957
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 49309337
Gene end: 49424563
  
Corresponding Affymetrix probe sets: Gga.10953.1.S1_s_at (Chicken Array)   Gga.5056.1.S1_at (Chicken Array)   Gga.5057.1.S1_s_at (Chicken Array)   GgaAffx.7555.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000019357
Ensembl peptide - ENSGALP00000057630
Ensembl peptide - ENSGALP00000047977
NCBI entrez gene - 417980     See in Manteia.
RefSeq - XM_015289183
RefSeq - XM_004937690
RefSeq - XM_004937691
RefSeq - XM_015289182
RefSeq - XM_004937687
RefSeq - XM_004937688
RefSeq - XM_004937689
swissprot - E1BXI6
swissprot - A0A1D5PXD6
swissprot - A0A1D5P5K6
Ensembl - ENSGALG00000011878
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tcf20ENSDARG00000078348Danio rerio
 TCF20ENSG00000100207Homo sapiens
 Tcf20ENSMUSG00000041852Mus musculus
 Zfp957ENSMUSG00000071262Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAI1 / retinoic acid induced 1 / Q61818* / Q7Z5J4*ENSGALG0000000488822


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr