ENSDARG00000078546


Danio rerio

Features
Gene ID: ENSDARG00000078546
  
Biological name :cars2
  
Synonyms : cars2 / cysteinyl-tRNA synthetase 2, mitochondrial
  
Possible biological names infered from orthology : cysteinyl-tRNA synthetase 2 (mitochondrial)(putative) / Q9HA77
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 29183962
Gene end: 29202689
  
Corresponding Affymetrix probe sets: Dr.17358.1.A1_at (Zebrafish Array)   XM_677640_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000103031
NCBI entrez gene - 555187     See in Manteia.
RefSeq - XM_677640
swissprot - E7FC09
ZFIN ID - ZDB-GENE-030131-5564
Ensembl - ENSDARG00000078546
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CARS2ENSGALG00000016847Gallus gallus
 CARS2ENSG00000134905Homo sapiens
 Cars2ENSMUSG00000056228Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cars / cysteinyl-tRNA synthetase / P49589* / Q9ER72* / Cysteine--tRNA ligase, cytoplasmic *ENSDARG0000003616434


Protein motifs (from Interpro)
Interpro ID Name
 IPR009080  Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR015803  Cysteine-tRNA ligase
 IPR024909  Cysteinyl-tRNA synthetase/mycothiol ligase
 IPR032678  tRNA synthetases class I, catalytic domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006418 tRNA aminoacylation for protein translation IEA
 biological_processGO:0006423 cysteinyl-tRNA aminoacylation IBA
 biological_processGO:0021828 gonadotrophin-releasing hormone neuronal migration to the hypothalamus IMP
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004817 cysteine-tRNA ligase activity IBA
 molecular_functionGO:0005524 ATP binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000402 olfactory bulb olfactory bulb spatial pattern , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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