ENSDARG00000078696


Danio rerio

Features
Gene ID: ENSDARG00000078696
  
Biological name :synpo2lb
  
Synonyms : synaptopodin 2-like b / synpo2lb
  
Possible biological names infered from orthology : Q8BWB1 / Q9H987 / synaptopodin 2 like / SYNPO2L
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 26408351
Gene end: 26430507
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000099972
Ensembl peptide - ENSDARP00000127295
Ensembl peptide - ENSDARP00000152649
NCBI entrez gene - 100001241     See in Manteia.
RefSeq - XM_001341244
swissprot - F1R899
swissprot - U3JAM7
ZFIN ID - ZDB-GENE-090828-5
Ensembl - ENSDARG00000078696
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYNPO2LENSGALG00000005207Gallus gallus
 Q9H987ENSG00000166317Homo sapiens
 Q8BWB1ENSMUSG00000039376Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
synpo2la / synaptopodin 2-like a / Q8BWB1* / Q9H987* / SYNPO2L* / synaptopodin 2 like*ENSDARG0000007729351
LO018188.1 / SYNPO* / Q8N3V7* / synaptopodin*ENSDARG0000010687312
synpo2b / synaptopodin 2b / Q91YE8* / Q9UMS6* / SYNPO2* / synaptopodin 2*ENSDARG0000007715711


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007519 skeletal muscle tissue development IMP
 biological_processGO:0032233 positive regulation of actin filament bundle assembly IBA
 biological_processGO:0048738 cardiac muscle tissue development IMP
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0015629 actin cytoskeleton IBA
 cellular_componentGO:0030018 Z disc IBA
 molecular_functionGO:0003779 actin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000114 heart heart increased width , abnormal
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 ZFA:0000360 heart tube heart tube increased width , abnormal
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 ZFA:0000610 vertical myoseptum vertical myoseptum curved , abnormal
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 ZFA:0001056 myotome myotome U-shaped , abnormal
myotome actin filament absent , abnormal
myotome myofibril disorganized , abnormal
myotome sarcomere disorganized , abnormal
myotome Z disc structure , abnormal
myotome myosin filament absent , abnormal
Show

 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
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 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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