ENSG00000166317


Homo sapiens

Features
Gene ID: ENSG00000166317
  
Biological name :SYNPO2L
  
Synonyms : Q9H987 / synaptopodin 2 like / SYNPO2L
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q22.2
Gene start: 73644881
Gene end: 73663803
  
Corresponding Affymetrix probe sets: 219804_at (Human Genome U133 Plus 2.0 Array)   243313_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000475768
Ensembl peptide - ENSP00000361964
Ensembl peptide - ENSP00000378289
NCBI entrez gene - 79933     See in Manteia.
RefSeq - XM_005270159
RefSeq - NM_001114133
RefSeq - NM_024875
RefSeq Peptide - NP_001107605
RefSeq Peptide - NP_079151
swissprot - Q9H987
swissprot - U3KQD0
swissprot - A0A024QZQ8
Ensembl - ENSG00000166317
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 synpo2laENSDARG00000077293Danio rerio
 synpo2lbENSDARG00000078696Danio rerio
 SYNPO2LENSGALG00000005207Gallus gallus
 Q8BWB1ENSMUSG00000039376Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9UMS6 / SYNPO2 / synaptopodin 2ENSG0000017240332
SYNPO / Q8N3V7 / synaptopodinENSG0000017199221


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032233 positive regulation of actin filament bundle assembly IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0015629 actin cytoskeleton IBA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0030018 Z disc IBA
 cellular_componentGO:0030054 cell junction IDA
 molecular_functionGO:0003779 actin binding IBA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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