ENSG00000172403


Homo sapiens

Features
Gene ID: ENSG00000172403
  
Biological name :SYNPO2
  
Synonyms : Q9UMS6 / synaptopodin 2 / SYNPO2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q26
Gene start: 118850688
Gene end: 119061247
  
Corresponding Affymetrix probe sets: 225720_at (Human Genome U133 Plus 2.0 Array)   225721_at (Human Genome U133 Plus 2.0 Array)   225894_at (Human Genome U133 Plus 2.0 Array)   225895_at (Human Genome U133 Plus 2.0 Array)   227662_at (Human Genome U133 Plus 2.0 Array)   232119_at (Human Genome U133 Plus 2.0 Array)   244108_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000390965
Ensembl peptide - ENSP00000425496
Ensembl peptide - ENSP00000306015
Ensembl peptide - ENSP00000484885
Ensembl peptide - ENSP00000395143
Ensembl peptide - ENSP00000412623
NCBI entrez gene - 171024     See in Manteia.
RefSeq - NM_001128934
RefSeq - NM_001128933
RefSeq - NM_001286754
RefSeq - NM_001286755
RefSeq - NM_133477
RefSeq Peptide - NP_597734
RefSeq Peptide - NP_001122406
RefSeq Peptide - NP_001273683
RefSeq Peptide - NP_001273684
RefSeq Peptide - NP_001122405
swissprot - Q9UMS6
swissprot - H0Y9Y3
swissprot - B4E258
Ensembl - ENSG00000172403
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 synpo2bENSDARG00000077157Danio rerio
 SYNPO2ENSGALG00000011994Gallus gallus
 Q91YE8ENSMUSG00000050315Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9H987 / SYNPO2L / synaptopodin 2 likeENSG0000016631725
SYNPO / Q8N3V7 / synaptopodinENSG0000017199217


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IEA
 biological_processGO:0032233 positive regulation of actin filament bundle assembly IBA
 cellular_componentGO:0001725 stress fiber IDA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005925 focal adhesion IEA
 cellular_componentGO:0015629 actin cytoskeleton IDA
 cellular_componentGO:0030018 Z disc ISS
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0099023 tethering complex IEA
 molecular_functionGO:0003779 actin binding IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0031005 filamin binding IDA
 molecular_functionGO:0051371 muscle alpha-actinin binding ISS
 molecular_functionGO:0051393 alpha-actinin binding IDA
 molecular_functionGO:0071889 14-3-3 protein binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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