ENSG00000171992


Homo sapiens

Features
Gene ID: ENSG00000171992
  
Biological name :SYNPO
  
Synonyms : Q8N3V7 / synaptopodin / SYNPO
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q33.1
Gene start: 150601080
Gene end: 150659220
  
Corresponding Affymetrix probe sets: 202796_at (Human Genome U133 Plus 2.0 Array)   235128_at (Human Genome U133 Plus 2.0 Array)   235914_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000302139
Ensembl peptide - ENSP00000377789
Ensembl peptide - ENSP00000428378
Ensembl peptide - ENSP00000429268
NCBI entrez gene - 11346     See in Manteia.
OMIM - 608155
RefSeq - XM_017009008
RefSeq - NM_001109974
RefSeq - NM_001166208
RefSeq - NM_001166209
RefSeq - NM_007286
RefSeq - XM_005268370
RefSeq - XM_005268371
RefSeq - XM_006714755
RefSeq - XM_011537552
RefSeq - XM_017009007
RefSeq Peptide - NP_001159680
RefSeq Peptide - NP_001159681
RefSeq Peptide - NP_009217
RefSeq Peptide - NP_001103444
swissprot - Q8N3V7
Ensembl - ENSG00000171992
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LO018188.1ENSDARG00000106873Danio rerio
 SYNPOENSGALG00000027330Gallus gallus
 SynpoENSMUSG00000043079Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9UMS6 / SYNPO2 / synaptopodin 2ENSG0000017240322
Q9H987 / SYNPO2L / synaptopodin 2 likeENSG0000016631722


Protein motifs (from Interpro)
Interpro ID Name
 IPR028753  Synaptopodin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008542 visual learning IEA
 biological_processGO:0032233 positive regulation of actin filament bundle assembly IBA
 biological_processGO:0048169 regulation of long-term neuronal synaptic plasticity IEA
 biological_processGO:0098886 modification of dendritic spine IDA
 biological_processGO:1905355 spine apparatus assembly IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0014069 postsynaptic density IEA
 cellular_componentGO:0015629 actin cytoskeleton IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030018 Z disc IBA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043197 dendritic spine TAS
 cellular_componentGO:0043204 perikaryon IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 cellular_componentGO:0097444 spine apparatus IEA
 molecular_functionGO:0003779 actin binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr