ENSDARG00000078966


Danio rerio

Features
Gene ID: ENSDARG00000078966
  
Biological name :rbm15b
  
Synonyms : rbm15b / RNA binding motif protein 15B
  
Possible biological names infered from orthology : Q6PHZ5 / Q8NDT2
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 32235922
Gene end: 32241124
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000101696
Ensembl peptide - ENSDARP00000114195
NCBI entrez gene - 100136872     See in Manteia.
RefSeq - NM_001114590
RefSeq Peptide - NP_001108062
swissprot - F1QRZ9
swissprot - E9QBX7
ZFIN ID - ZDB-GENE-080204-91
Ensembl - ENSDARG00000078966
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000002372Gallus gallus
 Q8NDT2ENSG00000259956Homo sapiens
 Q6PHZ5ENSMUSG00000074102Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm15 / RNA binding motif protein 15 / Q96T37*ENSDARG0000007384743
spen / spen family transcriptional repressor / Q96T58* / spen family transcription repressor*ENSDARG0000007424526
si:ch1073-335m2.2 / SPEN* / Q96T58* / spen family transcriptional repressor*ENSDARG0000007433224


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR010912  Spen paralogue/orthologue C-terminal, metazoa
 IPR012921  Spen paralogue and orthologue SPOC, C-terminal
 IPR016194  SPOC-like, C-terminal domain superfamily
 IPR034475  RBM15B, RNA recognition motif 1
 IPR034535  RBM15B, RNA recognition motif 2
 IPR034536  RBM15B, RNA recognition motif 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr