ENSDARG00000074332


Danio rerio

Features
Gene ID: ENSDARG00000074332
  
Biological name :si:ch1073-335m2.2
  
Synonyms : si:ch1073-335m2.2
  
Possible biological names infered from orthology : Q96T58 / SPEN / spen family transcriptional repressor / spen family transcription repressor
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 130967
Gene end: 155627
  
Corresponding Affymetrix probe sets: Dr.10834.2.S1_at (Zebrafish Array)   Dr.10834.3.A1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000100192
NCBI entrez gene - 322667     See in Manteia.
RefSeq - XM_002666099
RefSeq - XM_005170347
RefSeq - XM_005170348
swissprot - F1Q618
ZFIN ID - ZDB-GENE-081104-82
Ensembl - ENSDARG00000074332
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SPENENSGALG00000036932Gallus gallus
 SPENENSG00000065526Homo sapiens
 SpenENSMUSG00000040761Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
spen / spen family transcriptional repressor / Q96T58* / spen family transcription repressor*ENSDARG0000007424544
rbm15 / RNA binding motif protein 15 / Q96T37*ENSDARG000000738477
rbm15b / RNA binding motif protein 15B / Q6PHZ5* / Q8NDT2*ENSDARG000000789666


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR010912  Spen paralogue/orthologue C-terminal, metazoa
 IPR012921  Spen paralogue and orthologue SPOC, C-terminal
 IPR016194  SPOC-like, C-terminal domain superfamily
 IPR034172  SHARP, RNA recognition motif 1
 IPR034173  SHARP, RNA recognition motif 2
 IPR034174  SHARP, RNA recognition motif 3
 IPR034175  SHARP, RNA recognition motif 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IBA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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