ENSGALG00000036932


Gallus gallus

Features
Gene ID: ENSGALG00000036932
  
Biological name :SPEN
  
Synonyms : SPEN / spen family transcriptional repressor
  
Possible biological names infered from orthology : Q96T58 / spen family transcription repressor
  
Species: Gallus gallus
  
Chr. number: 21
Strand: 1
Band:
Gene start: 4241963
Gene end: 4297458
  
Corresponding Affymetrix probe sets: Gga.17339.1.S1_s_at (Chicken Array)   Gga.17516.1.A1_s_at (Chicken Array)   Gga.17516.1.S1_s_at (Chicken Array)   Gga.17720.1.S1_at (Chicken Array)   GgaAffx.25926.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044112
Ensembl peptide - ENSGALP00000055574
Ensembl peptide - ENSGALP00000046371
NCBI entrez gene - 419460     See in Manteia.
RefSeq - XM_015297011
RefSeq - XM_015297008
RefSeq - XM_015297009
RefSeq - XM_015297010
RefSeq - XM_015297005
RefSeq - XM_015297006
swissprot - A0A1D5P140
swissprot - A0A1D5NUU4
swissprot - A0A1D5PRP6
Ensembl - ENSGALG00000036932
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch1073-335m2.2ENSDARG00000074332Danio rerio
 spenENSDARG00000074245Danio rerio
 SPENENSG00000065526Homo sapiens
 SpenENSMUSG00000040761Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBM15 / RNA binding motif protein 15 / Q96T37*ENSGALG000000004017
Q6PHZ5* / Q8NDT2* / RBM15B* / RNA binding motif protein 15B*ENSGALG000000023722


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR010912  Spen paralogue/orthologue C-terminal, metazoa
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR012921  Spen paralogue and orthologue SPOC, C-terminal
 IPR016194  SPOC-like, C-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0050769 positive regulation of neurogenesis IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IEA
 molecular_functionGO:0001191 transcriptional repressor activity, RNA polymerase II transcription factor binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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