ENSDARG00000079055


Danio rerio

Features
Gene ID: ENSDARG00000079055
  
Biological name :si:dkey-85a20.4
  
Synonyms : si:dkey-85a20.4
  
Possible biological names infered from orthology : Q13395 / TARBP1 / TAR (HIV-1) RNA binding protein 1
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 39277178
Gene end: 39322872
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000099781
Ensembl peptide - ENSDARP00000118921
Ensembl peptide - ENSDARP00000122225
swissprot - F1Q8L2
swissprot - F1QVL0
swissprot - F1R356
ZFIN ID - ZDB-GENE-090313-347
Ensembl - ENSDARG00000079055
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TARBP1ENSGALG00000011000Gallus gallus
 Q13395ENSG00000059588Homo sapiens
 Tarbp1ENSMUSG00000090290Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-85a20.4 / Q13395* / TARBP1* / TAR (HIV-1) RNA binding protein 1*ENSDARG0000009255011


Protein motifs (from Interpro)
Interpro ID Name
 IPR001537  tRNA/rRNA methyltransferase, SpoU type
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR025806  Probable methyltransferase TARBP1
 IPR029026  tRNA (guanine-N1-)-methyltransferase, N-terminal
 IPR029028  Alpha/beta knot methyltransferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000453 enzyme-directed rRNA 2"-O-methylation IBA
 biological_processGO:0001510 RNA methylation IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0030488 tRNA methylation IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008173 RNA methyltransferase activity IEA
 molecular_functionGO:0016423 tRNA (guanine) methyltransferase activity IBA
 molecular_functionGO:0070039 rRNA (guanosine-2"-O-)-methyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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