ENSG00000059588


Homo sapiens

Features
Gene ID: ENSG00000059588
  
Biological name :TARBP1
  
Synonyms : Q13395 / TARBP1 / TAR (HIV-1) RNA binding protein 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q42.2
Gene start: 234391313
Gene end: 234479103
  
Corresponding Affymetrix probe sets: 202813_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000040877
NCBI entrez gene - 6894     See in Manteia.
OMIM - 605052
RefSeq - XM_017002197
RefSeq - NM_005646
RefSeq - XM_017002194
RefSeq - XM_017002195
RefSeq - XM_005273234
RefSeq - XM_011544263
RefSeq Peptide - NP_005637
swissprot - Q13395
Ensembl - ENSG00000059588
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:dkey-85a20.4ENSDARG00000079055Danio rerio
 si:dkey-85a20.4ENSDARG00000092550Danio rerio
 TARBP1ENSGALG00000011000Gallus gallus
 Tarbp1ENSMUSG00000090290Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001537  tRNA/rRNA methyltransferase, SpoU type
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR025806  Probable methyltransferase TARBP1
 IPR029026  tRNA (guanine-N1-)-methyltransferase, N-terminal
 IPR029028  Alpha/beta knot methyltransferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000453 enzyme-directed rRNA 2"-O-methylation IBA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0030488 tRNA methylation IBA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005634 nucleus TAS
 molecular_functionGO:0003723 RNA binding TAS
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008173 RNA methyltransferase activity IEA
 molecular_functionGO:0016423 tRNA (guanine) methyltransferase activity IBA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0070039 rRNA (guanosine-2"-O-)-methyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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