ENSGALG00000011000


Gallus gallus

Features
Gene ID: ENSGALG00000011000
  
Biological name :TARBP1
  
Synonyms : TARBP1 / TAR (HIV-1) RNA binding protein 1
  
Possible biological names infered from orthology : Q13395
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 38573516
Gene end: 38605829
  
Corresponding Affymetrix probe sets: GgaAffx.6962.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017892
NCBI entrez gene - 421517     See in Manteia.
RefSeq - XM_419559
swissprot - F1NP06
Ensembl - ENSGALG00000011000
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:dkey-85a20.4ENSDARG00000079055Danio rerio
 si:dkey-85a20.4ENSDARG00000092550Danio rerio
 Q13395ENSG00000059588Homo sapiens
 Tarbp1ENSMUSG00000090290Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001537  tRNA/rRNA methyltransferase, SpoU type
 IPR025806  Probable methyltransferase TARBP1
 IPR029026  tRNA (guanine-N1-)-methyltransferase, N-terminal
 IPR029028  Alpha/beta knot methyltransferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000453 enzyme-directed rRNA 2"-O-methylation IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0030488 tRNA methylation IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008173 RNA methyltransferase activity IEA
 molecular_functionGO:0016423 tRNA (guanine) methyltransferase activity IBA
 molecular_functionGO:0070039 rRNA (guanosine-2"-O-)-methyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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