ENSMUSG00000090290


Mus musculus

Features
Gene ID: ENSMUSG00000090290
  
Biological name :Tarbp1
  
Synonyms : Tarbp1 / TAR (HIV-1) RNA binding protein 1
  
Possible biological names infered from orthology : Q13395
  
Species: Mus musculus
  
Chr. number: 8
Strand: -1
Band: E2
Gene start: 126425329
Gene end: 126475065
  
Corresponding Affymetrix probe sets: 10582778 (MoGene1.0st)   1429061_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000129815
NCBI entrez gene - 212728     See in Manteia.
MGI - MGI:4936930
RefSeq - XM_011248340
RefSeq - NM_001159907
RefSeq - XM_006530818
RefSeq - XM_011248339
RefSeq - XM_006530817
RefSeq Peptide - NP_001153379
swissprot - E9Q368
Ensembl - ENSMUSG00000090290
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:dkey-85a20.4ENSDARG00000079055Danio rerio
 si:dkey-85a20.4ENSDARG00000092550Danio rerio
 TARBP1ENSGALG00000011000Gallus gallus
 Q13395ENSG00000059588Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001537  tRNA/rRNA methyltransferase, SpoU type
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR025806  Probable methyltransferase TARBP1
 IPR029026  tRNA (guanine-N1-)-methyltransferase, N-terminal
 IPR029028  Alpha/beta knot methyltransferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000453 enzyme-directed rRNA 2"-O-methylation IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0030488 tRNA methylation IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0008173 RNA methyltransferase activity IEA
 molecular_functionGO:0016423 tRNA (guanine) methyltransferase activity IBA
 molecular_functionGO:0070039 rRNA (guanosine-2"-O-)-methyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr