ENSDARG00000079949


Danio rerio

Features
Gene ID: ENSDARG00000079949
  
Biological name :supt16h
  
Synonyms : SPT16 homolog, facilitates chromatin remodeling subunit / supt16h
  
Possible biological names infered from orthology : Q9Y5B9 / suppressor of Ty 16 / Supt16
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 1550966
Gene end: 1623385
  
Corresponding Affymetrix probe sets: Dr.20775.1.A1_at (Zebrafish Array)   Dr.20775.1.A1_x_at (Zebrafish Array)   Dr.24929.1.A1_x_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000143354
Ensembl peptide - ENSDARP00000153697
Ensembl peptide - ENSDARP00000111043
Ensembl peptide - ENSDARP00000142119
NCBI entrez gene - 562348     See in Manteia.
RefSeq - NM_001097584
RefSeq Peptide - NP_001091053
swissprot - A5A4L9
ZFIN ID - ZDB-GENE-031118-96
Ensembl - ENSDARG00000079949
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9Y5B9ENSG00000092201Homo sapiens
 Supt16ENSMUSG00000035726Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000994  Peptidase M24
 IPR011989  Armadillo-like helical
 IPR013719  Domain of unknown function DUF1747
 IPR013953  FACT complex subunit Spt16p/Cdc68p
 IPR029148  FACT complex subunit Spt16, N-terminal lobe domain
 IPR029149  Creatinase/Aminopeptidase P/Spt16, N-terminal
 IPR033825  FACT complex subunit SPT16


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
RNA Polymerase II Pre-transcription Events
TP53 Regulates Transcription of DNA Repair Genes
Regulation of TP53 Activity through Phosphorylation
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000013582 csnk2a2b / casein kinase 2, alpha prime polypeptide b / P19784* / O54833* / CSNK2A2* / casein kinase 2 alpha 2* / Casein kinase II subunit alpha *  / complex
 ENSDARG00000077776 Q91398 / csnk2b / casein kinase 2, beta polypeptide / P67870* / P67871* / casein kinase 2 beta* / Casein kinase II subunit beta *  / complex
 ENSDARG00000035559 tp53 / P79734 / tumor protein p53 / Trp53* / P04637* / P02340* / transformation related protein 53*  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr