ENSDARG00000086411


Danio rerio

Features
Gene ID: ENSDARG00000086411
  
Biological name :srsf10b
  
Synonyms : serine/arginine-rich splicing factor 10b / srsf10b
  
Possible biological names infered from orthology : O75494 / Q9R0U0 / serine and arginine rich splicing factor 10 / serine/arginine-rich splicing factor 10 / SRSF10
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 53427931
Gene end: 53434318
  
Corresponding Affymetrix probe sets: Dr.25728.1.S1_at (Zebrafish Array)   NM_200533_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000091866
Ensembl peptide - ENSDARP00000150144
NCBI entrez gene - 393505     See in Manteia.
RefSeq - NM_200533
RefSeq Peptide - NP_956827
swissprot - Q7SZS0
ZFIN ID - ZDB-GENE-040426-1415
Ensembl - ENSDARG00000086411
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRSF10ENSGALG00000004133Gallus gallus
 O75494ENSG00000188529Homo sapiens
 Q9R0U0ENSMUSG00000028676Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
srsf2b / serine/arginine-rich splicing factor 2b / SRSF8* / SRSF2* / Q01130* / Q9BRL6* / serine and arginine rich splicing factor 2* / serine and arginine rich splicing factor 8*ENSDARG0000010389332
srsf2a / serine/arginine-rich splicing factor 2a / SRSF8* / SRSF2* / Q9BRL6* / Q01130* / Q62093* / Serine/arginine-rich splicing factor 2 * / serine and arginine rich splicing factor 8* / s...ENSDARG0000005748432
CR293507.1ENSDARG0000011257220


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034477  Serine/arginine-rich splicing factor 12


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043484 regulation of RNA splicing IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr