ENSDARG00000103893


Danio rerio

Features
Gene ID: ENSDARG00000103893
  
Biological name :srsf2b
  
Synonyms : serine/arginine-rich splicing factor 2b / srsf2b
  
Possible biological names infered from orthology : Q01130 / Q62093 / Q9BRL6 / serine and arginine rich splicing factor 2 / serine and arginine rich splicing factor 8 / Serine/arginine-rich splicing factor 2 / SRSF2 / SRSF8
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 60594138
Gene end: 60602432
  
Corresponding Affymetrix probe sets: Dr.5070.1.S1_at (Zebrafish Array)   NM_199651_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000131299
NCBI entrez gene - 323700     See in Manteia.
RefSeq - NM_199651
RefSeq Peptide - NP_955945
swissprot - Q6NZT9
ZFIN ID - ZDB-GENE-030131-2420
Ensembl - ENSDARG00000103893
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRSF2ENSG00000161547Homo sapiens
 SRSF8ENSG00000263465Homo sapiens
 Srsf2ENSMUSG00000034120Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
srsf2a / serine/arginine-rich splicing factor 2a / SRSF8* / SRSF2* / Q9BRL6* / Q01130* / Q62093* / Serine/arginine-rich splicing factor 2 * / serine and arginine rich splicing factor 8* / s...ENSDARG0000005748478
srsf10b / serine/arginine-rich splicing factor 10b / Q9R0U0* / SRSF10* / O75494* / serine/arginine-rich splicing factor 10* / serine and arginine rich splicing factor 10*ENSDARG0000008641136
CR293507.1ENSDARG0000011257212


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034893  Serine/arginine-rich splicing factor 2-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043484 regulation of RNA splicing IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr