ENSDARG00000087897


Danio rerio

Features
Gene ID: ENSDARG00000087897
  
Biological name :h2afy2
  
Synonyms : h2afy2 / H2A histone family, member Y2
  
Possible biological names infered from orthology : Core histone macro-H2A.2 / Q8CCK0 / Q9P0M6
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 7753049
Gene end: 7767600
  
Corresponding Affymetrix probe sets: Dr.25598.1.A1_at (Zebrafish Array)   NM_001025502_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000105230
Ensembl peptide - ENSDARP00000141526
Ensembl peptide - ENSDARP00000141394
Ensembl peptide - ENSDARP00000131192
NCBI entrez gene - 558711     See in Manteia.
RefSeq - NM_001025502
RefSeq Peptide - NP_001020673
swissprot - A0A0R4IXR3
swissprot - A0A0R4IAE9
swissprot - A0A0R4IZ93
swissprot - Q4V914
ZFIN ID - ZDB-GENE-050913-114
Ensembl - ENSDARG00000087897
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 H2AFY2ENSGALG00000004794Gallus gallus
 H2AFY2ENSG00000099284Homo sapiens
 H2afy2ENSMUSG00000020086Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
h2afy / H2A histone family, member Y / O75367*ENSDARG0000009932961
hist1h2a2 / histone cluster 1 H2A family member 2 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000011259323
hist1h2a2 / histone cluster 1 H2A family member 2 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000011164823
h2afx1 / H2A histone family member X1 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000006899523
hist1h2a2 / histone cluster 1 H2A family member 2 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000011080923
hist1h2a1 / histone cluster 1 H2A family member1 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010945823
hist1h2a2 / histone cluster 1 H2A family member 2 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010975523
hist1h2a3 / hist1h2a2 / histone cluster 1 H2A family member 3 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000007028023
si:ch1073-153i20.5 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000010547823
CR354435.3 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000011153622
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010090622
FP236812.2 / H2AFX* / P16104* / H2A histone family member X*ENSDARG0000010992622
CU302436.3 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000011380022
si:ch211-113a14.19 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000011348122
hist1h2a5 / histone cluster 1 H2A family member 5 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000011413322
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010540022
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000011339922
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010544422
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000009859522
FP236812.4 / H2AFX* / P16104* / H2A histone family member X*ENSDARG0000011587522


Protein motifs (from Interpro)
Interpro ID Name
 IPR002119  Histone H2A
 IPR002589  Macro domain
 IPR007125  Histone H2A/H2B/H3
 IPR009072  Histone-fold
 IPR021171  Core histone macro-H2A
 IPR032454  Histone H2A, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006334 nucleosome assembly IEA
 biological_processGO:0006342 chromatin silencing IBA
 biological_processGO:0007420 brain development IMP
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0031490 chromatin DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001032 rhombomere 4 rhombomere 4 decreased size , abnormal
Show

 ZFA:0001094 whole organism whole organism curved dorsal , abnormal
Show

 ZFA:0007047 midbrain hindbrain boundary neural tube midbrain hindbrain boundary neural tube cleft , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr