ENSDARG00000100906


Danio rerio

Features
Gene ID: ENSDARG00000100906
  
Biological name :hist1h2a11
  
Synonyms : hist1h2a11 / histone cluster 1 H2A family member 11
  
Possible biological names infered from orthology : H2AFX / H2A histone family member X / Histone H2AX / P16104 / P27661
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 5975194
Gene end: 5975991
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000108828
NCBI entrez gene - 100004510     See in Manteia.
NCBI entrez gene - 100151041     See in Manteia.
NCBI entrez gene - 100001004     See in Manteia.
NCBI entrez gene - 103911344     See in Manteia.
swissprot - F1QTL1
ZFIN ID - ZDB-GENE-081205-1
Ensembl - ENSDARG00000100906
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000026449Gallus gallus
 ENSGALG00000045705Gallus gallus
 H2AFXENSG00000188486Homo sapiens
 H2afxENSMUSG00000049932Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG00000086552100
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG00000088686100
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG00000105444100
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG00000098595100
si:ch211-113a14.19 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000011348199
CU457819.1 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000010027999
FP340257.1 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000010002499
FP236812.4 / H2AFX* / P16104* / H2A histone family member X*ENSDARG0000011587599
CR354435.3 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000011153699
FP236812.2 / H2AFX* / P16104* / H2A histone family member X*ENSDARG0000010992699
CR354435.4 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000011370799
si:ch1073-153i20.5 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000010547898
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010540098
hist1h2a2 / histone cluster 1 H2A family member 2 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000011259398
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000011339998
h2afx1 / H2A histone family member X1 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000006899598
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000009912398
hist1h2a3 / hist1h2a2 / histone cluster 1 H2A family member 3 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000007028098
hist1h2a10 / histone cluster 1 H2A family member 10 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000011284098
hist1h2a2 / histone cluster 1 H2A family member 2 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010975598


Protein motifs (from Interpro)
Interpro ID Name
 IPR002119  Histone H2A
 IPR007125  Histone H2A/H2B/H3
 IPR009072  Histone-fold
 IPR032454  Histone H2A, C-terminal domain
 IPR032458  Histone H2A conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045087 innate immune response ISS
 biological_processGO:0050830 defense response to Gram-positive bacterium ISS
 biological_processGO:0051673 membrane disruption in other organism ISS
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0005615 extracellular space ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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