ENSDARG00000087962


Danio rerio

Features
Gene ID: ENSDARG00000087962
  
Biological name :rpap3
  
Synonyms : RNA polymerase II associated protein 3 / rpap3
  
Possible biological names infered from orthology : Q9D706 / Q9H6T3
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 966061
Gene end: 983242
  
Corresponding Affymetrix probe sets: Dr.16936.1.S1_at (Zebrafish Array)   NM_200204_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000107727
NCBI entrez gene - 393173     See in Manteia.
RefSeq - NM_200204
RefSeq Peptide - NP_956498
swissprot - F1R498
ZFIN ID - ZDB-GENE-040426-928
Ensembl - ENSDARG00000087962
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPAP3ENSGALG00000009743Gallus gallus
 RPAP3ENSG00000005175Homo sapiens
 Rpap3ENSMUSG00000022466Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
spag1a / F1RBN2 / sperm associated antigen 1a / SPAG1* / Q07617* / sperm associated antigen 1*ENSDARG0000000401715
Q6DGE9 / unc45b / unc-45 myosin chaperone B / Q8CGY6* / Q8IWX7*ENSDARG0000000843314
tomm70a / translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) / Q9CZW5* / TOMM70* / O94826* / Mitochondrial import receptor subunit TOM70 * / translocase of outer mitoc...ENSDARG0000002963914
unc45a / unc-45 myosin chaperone A / Q99KD5* / Q9H3U1*ENSDARG0000010364314
spag1b / sperm associated antigen 1bENSDARG0000006949912
tomm34 / translocase of outer mitochondrial membrane 34 / Q15785*ENSDARG0000000155712
ttc1 / tetratricopeptide repeat domain 1 / Q91Z38* / Q99614*ENSDARG0000004456711


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat
 IPR025986  RNA-polymerase II-associated protein 3-like, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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