ENSDARG00000089663


Danio rerio

Features
Gene ID: ENSDARG00000089663
  
Biological name :lsm3
  
Synonyms : lsm3 / LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
  
Possible biological names infered from orthology : P62310 / P62311 / U6 snRNA-associated Sm-like protein LSm3
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 31660964
Gene end: 31672566
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000104495
NCBI entrez gene - 100535720     See in Manteia.
swissprot - E7EZE6
ZFIN ID - ZDB-GENE-161207-2
Ensembl - ENSDARG00000089663
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM3ENSGALG00000031139Gallus gallus
 LSM3ENSG00000170860Homo sapiens
 Lsm3ENSMUSG00000034192Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR034105  Sm-like protein Lsm3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IBA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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