ENSGALG00000031139


Gallus gallus

Features
Gene ID: ENSGALG00000031139
  
Biological name :LSM3
  
Synonyms : LSM3 / LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
  
Possible biological names infered from orthology : P62310 / P62311 / U6 snRNA-associated Sm-like protein LSm3
  
Species: Gallus gallus
  
Chr. number: 12
Strand: 1
Band:
Gene start: 10810471
Gene end: 10812744
  
Corresponding Affymetrix probe sets: Gga.1101.1.S1_a_at (Chicken Array)   Gga.1101.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050320
NCBI entrez gene - 416040     See in Manteia.
RefSeq - NM_001277862
RefSeq Peptide - NP_001264791
swissprot - A0A1D5PC35
Ensembl - ENSGALG00000031139
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm3ENSDARG00000089663Danio rerio
 LSM3ENSG00000170860Homo sapiens
 Lsm3ENSMUSG00000034192Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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