ENSMUSG00000034192


Mus musculus

Features
Gene ID: ENSMUSG00000034192
  
Biological name :Lsm3
  
Synonyms : Lsm3 / P62311 / U6 snRNA-associated Sm-like protein LSm3
  
Possible biological names infered from orthology : LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated / P62310
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: D1
Gene start: 91515928
Gene end: 91522625
  
Corresponding Affymetrix probe sets: 10540118 (MoGene1.0st)   1448536_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000044178
Ensembl peptide - ENSMUSP00000145568
NCBI entrez gene - 67678     See in Manteia.
MGI - MGI:1914928
RefSeq - NM_026309
RefSeq Peptide - NP_080585
swissprot - P62311
Ensembl - ENSMUSG00000034192
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm3ENSDARG00000089663Danio rerio
 LSM3ENSGALG00000031139Gallus gallus
 LSM3ENSG00000170860Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR034105  Sm-like protein Lsm3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome ISO
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IBA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0030629 U6 snRNA 3"-end binding ISO


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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