ENSDARG00000091418


Danio rerio

Features
Gene ID: ENSDARG00000091418
  
Biological name :snx17
  
Synonyms : Q5RID7 / snx17 / sorting nexin 17
  
Possible biological names infered from orthology : Q15036 / Q8BVL3
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 19436187
Gene end: 19511700
  
Corresponding Affymetrix probe sets: Dr.5480.1.A1_at (Zebrafish Array)   NM_001045157_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000137695
Ensembl peptide - ENSDARP00000040190
NCBI entrez gene - 568263     See in Manteia.
RefSeq - NM_001045157
RefSeq - XM_009294624
RefSeq Peptide - NP_001038622
swissprot - Q5RID7
swissprot - A0A0R4ITX6
ZFIN ID - ZDB-GENE-030131-9475
Ensembl - ENSDARG00000091418
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000039122Gallus gallus
 SNX17ENSG00000115234Homo sapiens
 Snx17ENSMUSG00000029146Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx27a / sorting nexin family member 27a / SNX27* / Q96L92* / Q3UHD6* / Sorting nexin-27 * / sorting nexin family member 27*ENSDARG0000003380420
snx27b / sorting nexin family member 27b / SNX27* / Q96L92* / Q3UHD6* / Sorting nexin-27 * / sorting nexin family member 27*ENSDARG0000001697720


Protein motifs (from Interpro)
Interpro ID Name
 IPR000159  Ras-associating (RA) domain
 IPR001683  Phox homologous domain
 IPR028666  Sorting nexin-17


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:1990126 retrograde transport, endosome to plasma membrane IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle ISS
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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