ENSG00000115234


Homo sapiens

Features
Gene ID: ENSG00000115234
  
Biological name :SNX17
  
Synonyms : Q15036 / SNX17 / sorting nexin 17
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p23.3
Gene start: 27370496
Gene end: 27377533
  
Corresponding Affymetrix probe sets: 200991_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000399727
Ensembl peptide - ENSP00000405399
Ensembl peptide - ENSP00000439208
Ensembl peptide - ENSP00000233575
Ensembl peptide - ENSP00000401922
NCBI entrez gene - 9784     See in Manteia.
OMIM - 605963
RefSeq - XM_017005405
RefSeq - NM_001267059
RefSeq - NM_001267060
RefSeq - NM_001267061
RefSeq - NM_014748
RefSeq - XM_011533203
RefSeq Peptide - NP_001253989
RefSeq Peptide - NP_001253990
RefSeq Peptide - NP_055563
RefSeq Peptide - NP_001253988
swissprot - Q15036
swissprot - F8WEG6
swissprot - F8WFA0
swissprot - F8WAZ0
Ensembl - ENSG00000115234
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snx17ENSDARG00000091418Danio rerio
 SNX17ENSGALG00000032468Gallus gallus
 Snx17ENSMUSG00000029146Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNX31 / Q8N9S9 / sorting nexin 31ENSG0000017422636
SNX27 / Q96L92 / sorting nexin family member 27ENSG0000014337620


Protein motifs (from Interpro)
Interpro ID Name
 IPR000159  Ras-associating (RA) domain
 IPR001683  Phox homologous domain
 IPR028666  Sorting nexin-17
 IPR036871  PX domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003279 cardiac septum development IEA
 biological_processGO:0006707 cholesterol catabolic process IC
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016197 endosomal transport NAS
 biological_processGO:0030100 regulation of endocytosis NAS
 biological_processGO:0035904 aorta development IEA
 biological_processGO:0060976 coronary vasculature development IEA
 biological_processGO:1990126 retrograde transport, endosome to plasma membrane IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IDA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0010008 endosome membrane IDA
 cellular_componentGO:0016020 membrane NAS
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0005102 signaling receptor binding NAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IDA
 molecular_functionGO:0050750 low-density lipoprotein particle receptor binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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