ENSG00000143376


Homo sapiens

Features
Gene ID: ENSG00000143376
  
Biological name :SNX27
  
Synonyms : Q96L92 / SNX27 / sorting nexin family member 27
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q21.3
Gene start: 151612006
Gene end: 151699091
  
Corresponding Affymetrix probe sets: 221006_s_at (Human Genome U133 Plus 2.0 Array)   221498_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000496775
Ensembl peptide - ENSP00000494331
Ensembl peptide - ENSP00000496645
Ensembl peptide - ENSP00000357831
Ensembl peptide - ENSP00000357834
Ensembl peptide - ENSP00000357836
Ensembl peptide - ENSP00000400333
Ensembl peptide - ENSP00000493556
NCBI entrez gene - 81609     See in Manteia.
OMIM - 611541
RefSeq - XM_017002417
RefSeq - NM_001330723
RefSeq - NM_030918
RefSeq - XM_005245511
RefSeq - XM_011510024
RefSeq - XM_011510025
RefSeq - XM_011510026
RefSeq - XM_005245509
RefSeq - XM_005245510
RefSeq Peptide - NP_001317652
RefSeq Peptide - NP_112180
swissprot - Q96L92
swissprot - H7C603
Ensembl - ENSG00000143376
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snx27aENSDARG00000033804Danio rerio
 snx27bENSDARG00000016977Danio rerio
 SNX27ENSGALG00000040687Gallus gallus
 Snx27ENSMUSG00000028136Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNX17 / Q15036 / sorting nexin 17ENSG0000011523418
SNX31 / Q8N9S9 / sorting nexin 31ENSG0000017422616


Protein motifs (from Interpro)
Interpro ID Name
 IPR000159  Ras-associating (RA) domain
 IPR000299  FERM domain
 IPR001478  PDZ domain
 IPR001683  Phox homologous domain
 IPR028667  Sorting nexin-27
 IPR029071  Ubiquitin-like domain superfamily
 IPR036034  PDZ superfamily
 IPR036871  PX domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001770 establishment of natural killer cell polarity TAS
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0008333 endosome to lysosome transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016197 endosomal transport IEA
 biological_processGO:1990126 retrograde transport, endosome to plasma membrane IMP
 cellular_componentGO:0001772 immunological synapse IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IC
 cellular_componentGO:0005769 early endosome IDA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030904 retromer complex IDA
 cellular_componentGO:0031901 early endosome membrane IEA
 cellular_componentGO:0071203 WASH complex IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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