ENSGALG00000040687


Gallus gallus

Features
Gene ID: ENSGALG00000040687
  
Biological name :SNX27
  
Synonyms : SNX27 / sorting nexin family member 27
  
Possible biological names infered from orthology : Q3UHD6 / Q96L92 / Sorting nexin-27
  
Species: Gallus gallus
  
Chr. number: 25
Strand: 1
Band:
Gene start: 2829873
Gene end: 2845968
  
Corresponding Affymetrix probe sets: Gga.14732.1.A1_at (Chicken Array)   Gga.14732.1.S1_at (Chicken Array)   Gga.7093.1.S1_at (Chicken Array)   Gga.7093.1.S1_s_at (Chicken Array)   GgaAffx.12726.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044849
Ensembl peptide - ENSGALP00000059628
Ensembl peptide - ENSGALP00000059088
Ensembl peptide - ENSGALP00000049234
NCBI entrez gene - 425666     See in Manteia.
RefSeq - NM_001031346
RefSeq - XM_015280012
RefSeq Peptide - NP_001026517
swissprot - A0A1L1RLK4
swissprot - A0A1D5NWV6
swissprot - A0A1L1RK05
swissprot - A0A1D5P934
Ensembl - ENSGALG00000040687
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snx27aENSDARG00000033804Danio rerio
 snx27bENSDARG00000016977Danio rerio
 SNX27ENSG00000143376Homo sapiens
 Snx27ENSMUSG00000028136Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNX17 / sorting nexin 17 / Q15036* / Q8BVL3*ENSGALG000000324687
ENSGALG000000391226


Protein motifs (from Interpro)
Interpro ID Name
 IPR000159  Ras-associating (RA) domain
 IPR001478  PDZ domain
 IPR001683  Phox homologous domain
 IPR028667  Sorting nexin-27
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0008333 endosome to lysosome transport IEA
 biological_processGO:0016197 endosomal transport IEA
 biological_processGO:1990126 retrograde transport, endosome to plasma membrane IEA
 cellular_componentGO:0001772 immunological synapse IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030904 retromer complex IEA
 cellular_componentGO:0071203 WASH complex IEA
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr