ENSDARG00000016977


Danio rerio

Features
Gene ID: ENSDARG00000016977
  
Biological name :snx27b
  
Synonyms : snx27b / sorting nexin family member 27b
  
Possible biological names infered from orthology : Q3UHD6 / Q96L92 / SNX27 / Sorting nexin-27 / sorting nexin family member 27
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 23495600
Gene end: 23524374
  
Corresponding Affymetrix probe sets: Dr.11554.1.A1_at (Zebrafish Array)   NM_200540_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000011221
NCBI entrez gene - 393512     See in Manteia.
RefSeq - NM_200540
RefSeq Peptide - NP_956834
swissprot - Q6P3G2
ZFIN ID - ZDB-GENE-040426-1529
Ensembl - ENSDARG00000016977
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNX27ENSGALG00000040687Gallus gallus
 SNX27ENSG00000143376Homo sapiens
 Snx27ENSMUSG00000028136Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx27a / sorting nexin family member 27a / SNX27* / Q96L92* / Q3UHD6* / Sorting nexin-27 * / sorting nexin family member 27*ENSDARG0000003380477
snx17 / Q5RID7 / sorting nexin 17 / Q15036* / Q8BVL3*ENSDARG0000009141817


Protein motifs (from Interpro)
Interpro ID Name
 IPR000159  Ras-associating (RA) domain
 IPR001478  PDZ domain
 IPR001683  Phox homologous domain
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0016197 endosomal transport IEA
 biological_processGO:1990126 retrograde transport, endosome to plasma membrane IBA
 cellular_componentGO:0005769 early endosome IBA
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr