ENSDARG00000091652


Danio rerio

Features
Gene ID: ENSDARG00000091652
  
Biological name :xrn1
  
Synonyms : 5-3 exoribonuclease 1 / xrn1
  
Possible biological names infered from orthology : Q8IZH2
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 16597011
Gene end: 16647259
  
Corresponding Affymetrix probe sets: Dr.8865.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000141389
Ensembl peptide - ENSDARP00000105487
NCBI entrez gene - 394008     See in Manteia.
RefSeq - NM_201033
RefSeq - XM_005163317
RefSeq - XM_005163318
RefSeq Peptide - NP_957327
swissprot - F1Q4U5
swissprot - A0A0R4IYZ5
ZFIN ID - ZDB-GENE-040426-1203
Ensembl - ENSDARG00000091652
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 XRN1ENSGALG00000002706Gallus gallus
 XRN1ENSG00000114127Homo sapiens
 Xrn1ENSMUSG00000032410Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004859  Putative 5-3 exonuclease
 IPR016494  5"-3" exoribonuclease 1
 IPR027073  5"-3" exoribonuclease


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004527 exonuclease activity IEA
 molecular_functionGO:0008409 5"-3" exonuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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