ENSGALG00000002706


Gallus gallus

Features
Gene ID: ENSGALG00000002706
  
Biological name :XRN1
  
Synonyms : 5-3 exoribonuclease 1 / XRN1
  
Possible biological names infered from orthology : Q8IZH2
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 10439333
Gene end: 10471471
  
Corresponding Affymetrix probe sets: GgaAffx.1767.2.S1_s_at (Chicken Array)   GgaAffx.1767.4.S1_s_at (Chicken Array)   GgaAffx.21201.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004257
NCBI entrez gene - 424778     See in Manteia.
RefSeq - XM_015276961
RefSeq - XM_015276962
RefSeq - XM_422596
swissprot - E1C8R7
Ensembl - ENSGALG00000002706
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 xrn1ENSDARG00000091652Danio rerio
 XRN1ENSG00000114127Homo sapiens
 Xrn1ENSMUSG00000032410Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004859  Putative 5-3 exonuclease
 IPR027073  5"-3" exoribonuclease


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0016075 rRNA catabolic process IEA
 biological_processGO:0071028 nuclear mRNA surveillance IEA
 biological_processGO:0071044 histone mRNA catabolic process IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004527 exonuclease activity IEA
 molecular_functionGO:0004534 5"-3" exoribonuclease activity IEA
 molecular_functionGO:0008409 5"-3" exonuclease activity IEA


Pathways (from Reactome)
Pathway description
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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