ENSDARG00000091831


Danio rerio

Features
Gene ID: ENSDARG00000091831
  
Biological name :ddx27
  
Synonyms : ddx27 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
  
Possible biological names infered from orthology : DEAD-box helicase 27 / Probable ATP-dependent RNA helicase DDX27 / Q921N6 / Q96GQ7
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 57436314
Gene end: 57476465
  
Corresponding Affymetrix probe sets: Dr.9315.1.A1_at (Zebrafish Array)   NM_001002869_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000105288
NCBI entrez gene - 378844     See in Manteia.
RefSeq - NM_001002869
RefSeq Peptide - NP_001002869
swissprot - F1QPH6
ZFIN ID - ZDB-GENE-031001-8
Ensembl - ENSDARG00000091831
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX27ENSGALG00000006974Gallus gallus
 DDX27ENSG00000124228Homo sapiens
 Ddx27ENSMUSG00000017999Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain quality , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
Show

 ZFA:0000106 extension extension decreased thickness , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased length , abnormal
trunk decreased thickness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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