ENSG00000124228


Homo sapiens

Features
Gene ID: ENSG00000124228
  
Biological name :DDX27
  
Synonyms : DDX27 / DEAD-box helicase 27 / Q96GQ7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q13.13
Gene start: 49219295
Gene end: 49244077
  
Corresponding Affymetrix probe sets: 215693_x_at (Human Genome U133 Plus 2.0 Array)   219108_x_at (Human Genome U133 Plus 2.0 Array)   221780_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000360828
Ensembl peptide - ENSP00000483495
Ensembl peptide - ENSP00000483119
Ensembl peptide - ENSP00000482680
Ensembl peptide - ENSP00000481808
NCBI entrez gene - 55661     See in Manteia.
OMIM - 616621
RefSeq - XM_011528888
RefSeq - NM_017895
RefSeq Peptide - NP_060365
swissprot - A0A087X059
swissprot - B7Z6D5
swissprot - Q96GQ7
swissprot - A0A087WYH5
Ensembl - ENSG00000124228
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx27ENSDARG00000091831Danio rerio
 DDX27ENSGALG00000006974Gallus gallus
 Ddx27ENSMUSG00000017999Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing IMP
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr