ENSDARG00000092508


Danio rerio

Features
Gene ID: ENSDARG00000092508
  
Biological name :si:ch73-376l24.2
  
Synonyms : si:ch73-376l24.2
  
Possible biological names infered from orthology : Q15361 / Q62187 / transcription termination factor 1 / transcription termination factor, RNA polymerase I / TTF1
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 63302660
Gene end: 63319502
  
Corresponding Affymetrix probe sets: Dr.11541.1.A1_at (Zebrafish Array)   Dr.26374.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000120656
Ensembl peptide - ENSDARP00000144563
NCBI entrez gene - 100333053     See in Manteia.
swissprot - A0A286YBY6
swissprot - E9QJC6
ZFIN ID - ZDB-GENE-100922-46
Ensembl - ENSDARG00000092508
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000027242Gallus gallus
 TTF1ENSG00000125482Homo sapiens
 Ttf1ENSMUSG00000026803Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch73-376l24.3 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009404384
si:ch73-37h15.2 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009410760
si:ch73-376l24.4 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009340350
ttf1 / transcription termination factor, RNA polymerase I / Q15361* / Q62187* / transcription termination factor 1*ENSDARG0000009196742
si:ch73-376l24.6 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009399938
dmtf1 / Q6DG03 / cyclin D binding myb-like transcription factor 1 / Q9Y222* / Q8CE22* / 4932411N23Rik* / RIKEN cDNA 4932411N23 gene*ENSDARG0000002582416


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR017877  Myb-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0030154 cell differentiation IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0001135 transcription factor activity, RNA polymerase II transcription factor recruiting IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
Surfactant metabolism
RNA Polymerase I Transcription Initiation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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