ENSDARG00000092927


Danio rerio

Features
Gene ID: ENSDARG00000092927
  
Biological name :si:dkey-44g23.2
  
Synonyms : si:dkey-44g23.2
  
Possible biological names infered from orthology : Q6P1D7 / Q8IY92 / SLX4 / SLX4 structure-specific endonuclease subunit / Structure-specific endonuclease subunit SLX4
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 26804197
Gene end: 26806216
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119409
swissprot - F1R3N7
ZFIN ID - ZDB-GENE-050208-678
Ensembl - ENSDARG00000092927
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLX4ENSGALG00000031841Gallus gallus
 SLX4ENSG00000188827Homo sapiens
 Slx4ENSMUSG00000039738Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slx4 / SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae) / Q8IY92* / Q6P1D7* / SLX4 structure-specific endonuclease subunit* / Structure-specific endonuclease subunit SLX4 *ENSDARG0000006141499


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000706 meiotic DNA double-strand break processing IBA
 biological_processGO:0000712 resolution of meiotic recombination intermediates IBA
 biological_processGO:0036297 interstrand cross-link repair IBA
 cellular_componentGO:0033557 Slx1-Slx4 complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008821 crossover junction endodeoxyribonuclease activity IBA
 molecular_functionGO:0017108 5"-flap endonuclease activity IBA
 molecular_functionGO:0048257 3"-flap endonuclease activity IBA


Pathways (from Reactome)
Pathway description
Resolution of D-loop Structures through Holliday Junction Intermediates
Fanconi Anemia Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr