ENSDARG00000092987


Danio rerio

Features
Gene ID: ENSDARG00000092987
  
Biological name :zmat4a
  
Synonyms : zinc finger, matrin-type 4a / zmat4a
  
Possible biological names infered from orthology : Q8BZ94 / Q9H898 / zinc finger matrin-type 4 / ZMAT4
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 27583117
Gene end: 27743830
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000155994
Ensembl peptide - ENSDARP00000113655
Ensembl peptide - ENSDARP00000146823
Ensembl peptide - ENSDARP00000148690
Ensembl peptide - ENSDARP00000155881
NCBI entrez gene - 100270739     See in Manteia.
swissprot - F1QS09
ZFIN ID - ZDB-GENE-081104-333
Ensembl - ENSDARG00000092987
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZMAT4ENSGALG00000003470Gallus gallus
 ZMAT4ENSG00000165061Homo sapiens
 Zmat4ENSMUSG00000037492Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zmat4b / zinc finger, matrin-type 4b / ZMAT4* / Q8BZ94* / Q9H898* / zinc finger matrin-type 4*ENSDARG0000006141960
znf346 / zinc finger protein 346 / Q9UL40*ENSDARG0000006069534
zgc:114104 / ZMAT1* / KRCC1* / Q5H9K5* / Q99JT5* / Q9NPI7* / zinc finger matrin-type 1* / lysine rich coiled-coil 1* / Lysine-rich coiled-coil protein 1 *ENSDARG0000005867931
zgc:171482ENSDARG0000007441528


Protein motifs (from Interpro)
Interpro ID Name
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR013087  Zinc finger C2H2-type
 IPR022755  Zinc finger, double-stranded RNA binding


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator IBA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0002039 p53 binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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