ENSDARG00000098433


Danio rerio

Features
Gene ID: ENSDARG00000098433
  
Biological name :utp6
  
Synonyms : utp6 / UTP6, small subunit (SSU) processome component, homolog (yeast)
  
Possible biological names infered from orthology : Q8VCY6 / Q9NYH9 / UTP6, small subunit processome component
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 18524444
Gene end: 18531760
  
Corresponding Affymetrix probe sets: Dr.15435.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000134361
Ensembl peptide - ENSDARP00000141893
Ensembl peptide - ENSDARP00000134857
NCBI entrez gene - 393107     See in Manteia.
RefSeq - NM_001111207
RefSeq Peptide - NP_001104677
swissprot - A0A0R4IXD3
swissprot - A0A0R4IKF5
swissprot - A0A0R4IGM5
ZFIN ID - ZDB-GENE-040426-769
Ensembl - ENSDARG00000098433
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UTP6ENSGALG00000003260Gallus gallus
 UTP6ENSG00000108651Homo sapiens
 Utp6ENSMUSG00000035575Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013949  U3 small nucleolar RNA-associated protein 6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
 biological_processGO:0006396 RNA processing IEA
 molecular_functionGO:0030515 snoRNA binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr