ENSMUSG00000035575


Mus musculus

Features
Gene ID: ENSMUSG00000035575
  
Biological name :Utp6
  
Synonyms : Q8VCY6 / Utp6 / UTP6 small subunit processome component
  
Possible biological names infered from orthology : Q9NYH9
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: B5
Gene start: 79932321
Gene end: 79962390
  
Corresponding Affymetrix probe sets: 10388971 (MoGene1.0st)   1424500_at (Mouse Genome 430 2.0 Array)   1424501_at (Mouse Genome 430 2.0 Array)   1451378_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000046643
Ensembl peptide - ENSMUSP00000103876
NCBI entrez gene - 216987     See in Manteia.
MGI - MGI:2445193
RefSeq - NM_144826
RefSeq Peptide - NP_659075
swissprot - Q8VCY6
Ensembl - ENSMUSG00000035575
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 utp6ENSDARG00000098433Danio rerio
 UTP6ENSGALG00000003260Gallus gallus
 UTP6ENSG00000108651Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013949  U3 small nucleolar RNA-associated protein 6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0034388 Pwp2p-containing subcomplex of 90S preribosome IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030515 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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