ENSDARG00000098919


Danio rerio

Features
Gene ID: ENSDARG00000098919
  
Biological name :smarcc1b
  
Synonyms : smarcc1b / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b
  
Possible biological names infered from orthology : P97496 / Q92922 / SMARCC1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 19342177
Gene end: 19379084
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000131040
NCBI entrez gene - 553471     See in Manteia.
RefSeq - NM_001089367
RefSeq Peptide - NP_001082836
swissprot - A0A0R4IDE0
ZFIN ID - ZDB-GENE-060503-273
Ensembl - ENSDARG00000098919
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMARCC1ENSGALG00000032642Gallus gallus
 Q92922ENSG00000173473Homo sapiens
 P97496ENSMUSG00000032481Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smarcc1a / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a / P97496* / Q92922* / SMARCC1* / SWI/SNF related, matrix associated, actin depe...ENSDARG0000001739764
smarcc2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 / Q6PDG5* / Q8TAQ2* / SWI/SNF complex subunit SMARCC2 *ENSDARG0000007794658


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR001357  BRCT domain
 IPR007526  SWIRM domain
 IPR009057  Homeobox-like domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017884  SANT domain
 IPR030087  SWI/SNF complex subunit SMARCC1
 IPR032448  SMARCC, SWIRM-associated domain
 IPR032450  SMARCC, N-terminal
 IPR032451  SMARCC, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr