ENSDARG00000077946


Danio rerio

Features
Gene ID: ENSDARG00000077946
  
Biological name :smarcc2
  
Synonyms : smarcc2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
  
Possible biological names infered from orthology : Q6PDG5 / Q8TAQ2 / SWI/SNF complex subunit SMARCC2
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 39836474
Gene end: 39866670
  
Corresponding Affymetrix probe sets: Dr.11224.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000099015
NCBI entrez gene - 567476     See in Manteia.
RefSeq - XM_021474611
RefSeq - XM_690772
swissprot - E7FFZ4
ZFIN ID - ZDB-GENE-100728-1
Ensembl - ENSDARG00000077946
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMARCC2ENSGALG00000041592Gallus gallus
 Q8TAQ2ENSG00000139613Homo sapiens
 Q6PDG5ENSMUSG00000025369Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smarcc1a / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a / P97496* / Q92922* / SMARCC1* / SWI/SNF related, matrix associated, actin depe...ENSDARG0000001739762
smarcc1b / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b / P97496* / Q92922* / SMARCC1* / SWI/SNF related, matrix associated, actin depe...ENSDARG0000009891954


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR001357  BRCT domain
 IPR007526  SWIRM domain
 IPR009057  Homeobox-like domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017884  SANT domain
 IPR032448  SMARCC, SWIRM-associated domain
 IPR032450  SMARCC, N-terminal
 IPR032451  SMARCC, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000033647 Q5U379 / smarcb1a / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a / Q9Z0H3* / Q12824* / SMARCB1* / SWI/SNF related, matrix associated, a...  / complex
 ENSDARG00000008904 smarca2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 / P51531*  / complex
 ENSDARG00000077226 smarca4a / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a / P51532* / Q3TKT4* / SMARCA4* / SWI/SNF related, matrix associated, actin depe...  / complex
 ENSDARG00000017397 smarcc1a / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a / P97496* / Q92922* / SMARCC1* / SWI/SNF related, matrix associated, actin depe...  / complex
 ENSDARG00000087646 runx1 / runt-related transcription factor 1 / Q01196*  / reaction / complex






 

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