ENSGALG00000041592


Gallus gallus

Features
Gene ID: ENSGALG00000041592
  
Biological name :SMARCC2
  
Synonyms : SMARCC2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
  
Possible biological names infered from orthology : Q6PDG5 / Q8TAQ2 / SWI/SNF complex subunit SMARCC2
  
Species: Gallus gallus
  
Chr. number: 33
Strand: -1
Band:
Gene start: 693527
Gene end: 702193
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000049338
Ensembl peptide - ENSGALP00000054237
NCBI entrez gene - 101747634     See in Manteia.
RefSeq - XM_015300276
swissprot - A0A1D5P9D7
swissprot - A0A1D5PMZ9
Ensembl - ENSGALG00000041592
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarcc2ENSDARG00000077946Danio rerio
 Q8TAQ2ENSG00000139613Homo sapiens
 Q6PDG5ENSMUSG00000025369Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMARCC1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 / P97496* / Q92922*ENSGALG0000003264253


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR001005  SANT/Myb domain
 IPR001357  BRCT domain
 IPR007526  SWIRM domain
 IPR009057  Homeobox-like domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017884  SANT domain
 IPR032448  SMARCC, SWIRM-associated domain
 IPR032450  SMARCC, N-terminal
 IPR032451  SMARCC, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0021882 regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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