ENSGALG00000032642


Gallus gallus

Features
Gene ID: ENSGALG00000032642
  
Biological name :SMARCC1
  
Synonyms : SMARCC1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1
  
Possible biological names infered from orthology : P97496 / Q92922
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 770602
Gene end: 836615
  
Corresponding Affymetrix probe sets: GgaAffx.26390.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049849
NCBI entrez gene - 420378     See in Manteia.
RefSeq - XM_015281170
swissprot - A0A1D5PAT5
Ensembl - ENSGALG00000032642
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarcc1aENSDARG00000017397Danio rerio
 smarcc1bENSDARG00000098919Danio rerio
 Q92922ENSG00000173473Homo sapiens
 P97496ENSMUSG00000032481Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMARCC2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 / Q6PDG5* / Q8TAQ2* / SWI/SNF complex subunit SMARCC2 *ENSGALG0000004159259


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR001357  BRCT domain
 IPR007526  SWIRM domain
 IPR009057  Homeobox-like domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017884  SANT domain
 IPR030087  SWI/SNF complex subunit SMARCC1
 IPR032448  SMARCC, SWIRM-associated domain
 IPR032450  SMARCC, N-terminal
 IPR032451  SMARCC, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006337 nucleosome disassembly IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0008286 insulin receptor signaling pathway IEA
 biological_processGO:0009887 animal organ morphogenesis IEA
 biological_processGO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0001741 XY body IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0047485 protein N-terminus binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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