ENSDARG00000099380


Danio rerio

Features
Gene ID: ENSDARG00000099380
  
Biological name :rpl13
  
Synonyms : Q90Z10 / ribosomal protein L13 / rpl13
  
Possible biological names infered from orthology : 60S ribosomal protein L13 / P26373 / P47963
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 67467702
Gene end: 67477495
  
Corresponding Affymetrix probe sets: Dr.24815.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000140661
Ensembl peptide - ENSDARP00000132139
Ensembl peptide - ENSDARP00000144370
NCBI entrez gene - 378961     See in Manteia.
swissprot - A0A0R4IUM6
swissprot - Q90Z10
ZFIN ID - ZDB-GENE-031007-1
Ensembl - ENSDARG00000099380
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL13ENSGALG00000006179Gallus gallus
 RPL13ENSG00000167526Homo sapiens
 Rpl13ENSMUSG00000000740Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001380  Ribosomal protein L13e
 IPR018256  Ribosomal protein L13e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IBA
 biological_processGO:0051726 regulation of cell cycle IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary condensed , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
Show

 ZFA:0000106 extension extension decreased thickness , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
Show

 ZFA:0000142 peripheral nervous system peripheral nervous system nerve neoplastic , abnormal
Show

 ZFA:0001094 whole organism whole organism quality , abnormal
whole organism decreased size , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk curved dorsal , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr