ENSGALG00000006179


Gallus gallus

Features
Gene ID: ENSGALG00000006179
  
Biological name :RPL13
  
Synonyms : 60S ribosomal protein L13 / P41125 / RPL13
  
Possible biological names infered from orthology : P26373 / P47963 / ribosomal protein L13
  
Species: Gallus gallus
  
Chr. number: 11
Strand: 1
Band:
Gene start: 18978055
Gene end: 18982325
  
Corresponding Affymetrix probe sets: Gga.14139.1.S1_at (Chicken Array)   Gga.4040.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058781
Ensembl peptide - ENSGALP00000063427
Ensembl peptide - ENSGALP00000062948
Ensembl peptide - ENSGALP00000062041
Ensembl peptide - ENSGALP00000009960
Ensembl peptide - ENSGALP00000051024
NCBI entrez gene - 395849     See in Manteia.
RefSeq - NM_204999
RefSeq Peptide - NP_990330
swissprot - A0A1L1RX50
swissprot - A0A1L1RJ56
swissprot - A0A1I7Q3Z6
swissprot - P41125
Ensembl - ENSGALG00000006179
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl13ENSDARG00000099380Danio rerio
 RPL13ENSG00000167526Homo sapiens
 Rpl13ENSMUSG00000000740Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001380  Ribosomal protein L13e
 IPR018256  Ribosomal protein L13e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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