ENSG00000167526


Homo sapiens

Features
Gene ID: ENSG00000167526
  
Biological name :RPL13
  
Synonyms : P26373 / ribosomal protein L13 / RPL13
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q24.3
Gene start: 89560657
Gene end: 89566828
  
Corresponding Affymetrix probe sets: 1565759_at (Human Genome U133 Plus 2.0 Array)   208929_x_at (Human Genome U133 Plus 2.0 Array)   212191_x_at (Human Genome U133 Plus 2.0 Array)   212734_x_at (Human Genome U133 Plus 2.0 Array)   212933_x_at (Human Genome U133 Plus 2.0 Array)   214351_x_at (Human Genome U133 Plus 2.0 Array)   214976_at (Human Genome U133 Plus 2.0 Array)   229590_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464612
Ensembl peptide - ENSP00000438959
Ensembl peptide - ENSP00000376811
Ensembl peptide - ENSP00000307889
Ensembl peptide - ENSP00000457686
Ensembl peptide - ENSP00000462380
Ensembl peptide - ENSP00000455009
Ensembl peptide - ENSP00000457174
NCBI entrez gene - 6137     See in Manteia.
OMIM - 113703
RefSeq - NM_001243131
RefSeq - NM_000977
RefSeq - NM_001243130
RefSeq - NM_033251
RefSeq Peptide - NP_000968
RefSeq Peptide - NP_150254
RefSeq Peptide - NP_001230060
RefSeq Peptide - NP_001230059
swissprot - P26373
swissprot - A8K4C8
swissprot - H3BTH3
swissprot - H3BUK8
swissprot - J3KS98
swissprot - J3QSB4
Ensembl - ENSG00000167526
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl13ENSDARG00000099380Danio rerio
 RPL13ENSGALG00000006179Gallus gallus
 Rpl13ENSMUSG00000000740Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001380  Ribosomal protein L13e
 IPR018256  Ribosomal protein L13e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006412 translation IBA
 biological_processGO:0006413 translational initiation TAS
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS
 biological_processGO:0019083 viral transcription TAS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus HDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit HDA
 cellular_componentGO:0022626 cytosolic ribosome TAS
 molecular_functionGO:0003723 RNA binding TAS
 molecular_functionGO:0003735 structural constituent of ribosome TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Peptide chain elongation
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Selenocysteine synthesis
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Eukaryotic Translation Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr