ENSDARG00000099667


Danio rerio

Features
Gene ID: ENSDARG00000099667
  
Biological name :snrpg
  
Synonyms : small nuclear ribonucleoprotein polypeptide G / snrpg
  
Possible biological names infered from orthology : Gm8186 / P62308 / P62309 / predicted gene 8186 / Small nuclear ribonucleoprotein G
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 33957350
Gene end: 33961989
  
Corresponding Affymetrix probe sets: Dr.14228.1.S1_at (Zebrafish Array)   NM_001004660_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000133036
NCBI entrez gene - 447922     See in Manteia.
RefSeq - NM_001303101
RefSeq - NM_001004660
RefSeq Peptide - NP_001004660
RefSeq Peptide - NP_001290030
swissprot - F1QPY7
ZFIN ID - ZDB-GENE-040912-105
Ensembl - ENSDARG00000099667
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRPGENSGALG00000028409Gallus gallus
 SNRPGENSG00000143977Homo sapiens
 Gm8186ENSMUSG00000049124Mus musculus
 SnrpgENSMUSG00000057278Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR034098  Small nuclear ribonucleoprotein G


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 cellular_componentGO:0034719 SMN-Sm protein complex IBA
 cellular_componentGO:0043186 P granule IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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