ENSDARG00000100209


Danio rerio

Features
Gene ID: ENSDARG00000100209
  
Biological name :prpf39
  
Synonyms : PRP39 pre-mRNA processing factor 39 homolog (yeast) / prpf39 / Q1JPZ7
  
Possible biological names infered from orthology : pre-mRNA processing factor 39 / Q86UA1
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 54213688
Gene end: 54245256
  
Corresponding Affymetrix probe sets: Dr.340.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000139799
NCBI entrez gene - 368864     See in Manteia.
swissprot - Q1JPZ7
ZFIN ID - ZDB-GENE-030616-420
Ensembl - ENSDARG00000100209
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000035606Gallus gallus
 ENSGALG00000012468Gallus gallus
 PRPF39ENSG00000185246Homo sapiens
 Prpf39ENSMUSG00000035597Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-114c17.1ENSDARG0000008799437


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000395 mRNA 5"-splice site recognition IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 molecular_functionGO:0030627 pre-mRNA 5"-splice site binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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