ENSG00000185246


Homo sapiens

Features
Gene ID: ENSG00000185246
  
Biological name :PRPF39
  
Synonyms : pre-mRNA processing factor 39 / PRPF39 / Q86UA1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q21.2
Gene start: 45084099
Gene end: 45116282
  
Corresponding Affymetrix probe sets: 220553_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000452428
Ensembl peptide - ENSP00000452516
Ensembl peptide - ENSP00000348010
Ensembl peptide - ENSP00000390867
Ensembl peptide - ENSP00000451331
Ensembl peptide - ENSP00000451334
Ensembl peptide - ENSP00000451988
NCBI entrez gene - 55015     See in Manteia.
OMIM - 614907
RefSeq - NM_017922
RefSeq Peptide - NP_060392
swissprot - H0YJR1
swissprot - H0YJY9
swissprot - Q86UA1
swissprot - F8WB90
swissprot - G3V5M7
Ensembl - ENSG00000185246
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prpf39ENSDARG00000100209Danio rerio
 ENSGALG00000035606Gallus gallus
 ENSGALG00000012468Gallus gallus
 Prpf39ENSMUSG00000035597Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000395 mRNA 5"-splice site recognition IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030627 pre-mRNA 5"-splice site binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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