ENSMUSG00000035597


Mus musculus

Features
Gene ID: ENSMUSG00000035597
  
Biological name :Prpf39
  
Synonyms : pre-mRNA processing factor 39 / Prpf39
  
Possible biological names infered from orthology : Q86UA1
  
Species: Mus musculus
  
Chr. number: 12
Strand: 1
Band: C1
Gene start: 65036333
Gene end: 65063386
  
Corresponding Affymetrix probe sets: 10396008 (MoGene1.0st)   1428171_at (Mouse Genome 430 2.0 Array)   1428172_at (Mouse Genome 430 2.0 Array)   1452688_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000112953
Ensembl peptide - ENSMUSP00000152756
Ensembl peptide - ENSMUSP00000152508
Ensembl peptide - ENSMUSP00000114713
NCBI entrez gene - 328110     See in Manteia.
MGI - MGI:104602
RefSeq - XM_017315120
RefSeq - XM_006516029
RefSeq - XM_006516026
RefSeq - NM_177806
RefSeq - XM_006516027
RefSeq - XM_006516028
RefSeq Peptide - NP_808474
swissprot - E9QJV4
swissprot - A0A1Y7VM45
swissprot - A0A1Y7VP14
swissprot - D6RDR5
Ensembl - ENSMUSG00000035597
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prpf39ENSDARG00000100209Danio rerio
 ENSGALG00000035606Gallus gallus
 ENSGALG00000012468Gallus gallus
 PRPF39ENSG00000185246Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr