ENSGALG00000012468


Gallus gallus

Features
Gene ID: ENSGALG00000012468
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : pre-mRNA processing factor 39 / PRPF39 / Q86UA1
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 58938717
Gene end: 58950942
  
Corresponding Affymetrix probe sets: Gga.19092.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000020349
swissprot - E1C8G8
Ensembl - ENSGALG00000012468
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prpf39ENSDARG00000100209Danio rerio
 PRPF39ENSG00000185246Homo sapiens
 Prpf39ENSMUSG00000035597Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PRPF39* / Q86UA1* / pre-mRNA processing factor 39*ENSGALG000000356062


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000395 mRNA 5"-splice site recognition IBA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 molecular_functionGO:0030627 pre-mRNA 5"-splice site binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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