ENSDARG00000101900


Danio rerio

Features
Gene ID: ENSDARG00000101900
  
Biological name :xrn2
  
Synonyms : 5-3 exoribonuclease 2 / xrn2
  
Possible biological names infered from orthology : Q9DBR1 / Q9H0D6
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 48810901
Gene end: 48898560
  
Corresponding Affymetrix probe sets: Dr.10637.1.S1_at (Zebrafish Array)   Dr.1515.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000137023
Ensembl peptide - ENSDARP00000138850
Ensembl peptide - ENSDARP00000137463
Ensembl peptide - ENSDARP00000135647
NCBI entrez gene - 321940     See in Manteia.
swissprot - A0A0R4ISJ3
swissprot - A0A0R4IMS1
swissprot - Q802V7
ZFIN ID - ZDB-GENE-040426-2874
Ensembl - ENSDARG00000101900
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 XRN2ENSGALG00000008372Gallus gallus
 XRN2ENSG00000088930Homo sapiens
 Xrn2ENSMUSG00000027433Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004859  Putative 5-3 exonuclease
 IPR017151  5"-3" exoribonuclease type 2
 IPR027073  5"-3" exoribonuclease


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006139 nucleobase-containing compound metabolic process IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004527 exonuclease activity IEA
 molecular_functionGO:0004534 5"-3" exoribonuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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